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Matrix Viewer Utility viewmat

This release of the GeneMark pacakge includes a utility for displaing the complete contents of a GeneMark matrix file in human-readable form. This information may or may not be of use. It should be noted that the output generated by this program can be VERY large.

The general syntax for the viewmat utility is:

viewmat matrix1 [ matrix2 ... ]

For example:

$ viewmat ecoli_1.mat
Matrix file /usr/local/share/matrices/sub-optimal/ecoli_0.mat, 348 bytes...

TITLE: Escherichia coli - DATE: 06/29/95 Time: 09:45:19
AUTHOR: wsh/MB
Order 0:
Direct transition matrix values...
# P(N|..) Frame 1 Frame 2 Frame 3 Noncoding
0 P(T) 0.15113 0.30100 0.24965 0.26840
1 P(C) 0.24981 0.22842 0.27530 0.22840
2 P(A) 0.24674 0.28777 0.16972 0.26866
3 P(G) 0.35231 0.18280 0.30533 0.23453

Complementary transition matrix values...
# P(..|N) Frame 1 Frame 2 Frame 3 Noncoding
0 P(A) 0.16979 0.28783 0.24680 0.26874
1 P(G) 0.30530 0.18279 0.35228 0.23451
2 P(T) 0.24963 0.30098 0.15112 0.26837
3 P(C) 0.27528 0.22841 0.24979 0.22838



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