GeneMark.HMM
(eukaryotic)

Accuracy

A. thaliana
supervised supervised
GM.hmm.3 GenScan
Exact exons      
All Sn 87 61
  Sp 81 70
Initial Sn 74 43
  Sp 68 65
Internal Sn 92 68
  Sp 87 72
Termination Sn 82 51
  Sp 73 69
Sites      
Initiation Sn 78 46
  Sp 71 70
Termination Sn 86 55
  Sp 77 75
Donor Sn 94 75
  Sp 88 84
Acceptor Sn 94 72
  Sp 88 79
C. elegans
supervised
GM.hmm.3
Exact exons    
All Sn 90
  Sp 84
Initial Sn 81
  Sp 64
Internal Sn 91
  Sp 89
Termination Sn 95
  Sp 75
Sites    
Initiation Sn 82
  Sp 65
Termination Sn 95
  Sp 75
Donor Sn 93
  Sp 89
Acceptor Sn 96
  Sp 91
D. melanogaster
supervised
GM.hmm.3
Exact exons    
All Sn 85
  Sp 86
Initial Sn 81
  Sp 77
Internal Sn 85
  Sp 90
Termination Sn 89
  Sp 84
Sites    
Initiation Sn 83
  Sp 79
Termination Sn 93
  Sp 88
Donor Sn 90
  Sp 92
Acceptor Sn 90
  Sp 92
O.sativa supervised
GM.hmm.3
Exact exons    
All Sn 93
  Sp 92
Initial Sn 88
  Sp 84
Internal Sn 97
  Sp 99
Termination Sn 89
  Sp 85
Sites    
Initiation Sn 91
  Sp 87
Termination Sn 95
  Sp 90
Donor Sn 96
  Sp 97
Acceptor Sn 95
  Sp 95



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